STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cep78Centrosomal protein of 78 kDa. (788 aa)    
Predicted Functional Partners:
haus6
HAUS6_N domain-containing protein.
   
 
  0.647
cdk11b
Cyclin-dependent kinase 11B.
     
 0.619
cdk10
Cyclin-dependent kinase 10; Belongs to the protein kinase superfamily.
     
 0.619
psat1
Phosphoserine aminotransferase.
 
    
 0.577
ubxn11
UBX domain protein 11.
      
 0.575
cep41
Centrosomal protein 41.
      
 0.531
cep290
Centrosomal protein 290.
    
 
 0.521
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.517
ttll5
Tubulin tyrosine ligase-like family, member 5.
      
 0.508
fgfr1op
FGFR1 oncogene partner.
    
   0.502
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.