STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erc1ELKS/RAB6-interacting/CAST family member 1a. (720 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.858
LOC105937758
Uncharacterized protein.
    
 
 0.858
napepld
N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D.
    
 
 0.657
yeats4
YEATS domain containing 4.
    
 
 0.651
dcp1b
Decapping mRNA 1B.
    
 
 0.651
cpsf6
Cleavage and polyadenylation specific factor 6, 68kDa, putative.
      
 0.636
LOC105917202
PTPRF interacting protein alpha 3.
    
 
 0.515
ppfia1
PTPRF interacting protein alpha 1.
    
 
 0.515
ppfia4
PTPRF interacting protein alpha 4.
    
 
 0.515
ppfia2
PTPRF interacting protein alpha 2.
    
 
 0.515
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.