STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prorpMitochondrial ribonuclease P protein 3. (595 aa)    
Predicted Functional Partners:
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.989
hsd17b10
Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.988
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
     
 0.831
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.753
pop1
POP1 homolog, ribonuclease P/MRP subunit.
   
 
 0.721
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.657
pdcd11
Programmed cell death 11.
  
    0.649
trmt10a
tRNA methyltransferase 10A.
   
 0.637
trmt10b
tRNA methyltransferase 10B.
   
 0.637
pop4
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
     
 0.628
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.