STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105936488Arsenite methyltransferase. (361 aa)    
Predicted Functional Partners:
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 0.872
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 0.786
LOC105916498
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 0.777
LOC105916509
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 0.777
sc5d
Sterol-C5-desaturase; Belongs to the sterol desaturase family.
   
 0.764
ENSFHEP00000020928
Uncharacterized protein.
    
 0.737
HSD17B7
Hydroxysteroid 17-beta dehydrogenase 7.
    
 0.737
ENSFHEP00000034974
Hydroxysteroid (17-beta) dehydrogenase 7.
    
 0.737
LOC105932362
Cholesterol 25-hydroxylase like 1, tandem duplicate 1; Belongs to the sterol desaturase family.
   
 0.712
LOC105931087
Cholesterol 25-hydroxylase like 2; Belongs to the sterol desaturase family.
   
 0.712
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.