STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000034530Uncharacterized protein. (101 aa)    
Predicted Functional Partners:
rabl6
RAB, member RAS oncogene family-like 6b.
 
     0.938
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.836
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.826
trappc8
Trafficking protein particle complex 8.
    
 0.825
LOC105920484
Trafficking protein particle complex subunit 6B.
    
 0.820
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.819
trappc2
Trafficking protein particle complex subunit 2.
    
 0.818
uso1
USO1 vesicle transport factor.
   
 0.784
LOC105938817
Lebercilin LCA5.
    
 0.782
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.782
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.