LOC105936990 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105936990

Consortin, connexin sorting protein b. (382 aa)

Predicted Functional Partners:

atp6v1e1

0.998

atp6v1f

0.995

LOC105922498

0.993

ATP6V1B2

0.993

ENSFHEP00000020396

0.991

atp6v0d1

0.991

atp6v0b

0.991

LOC105926136

0.987

atp6v1h

0.983

LOC105939711

0.980

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1B2	ENSFHEP00000020396	ENSFHEP00000013957	ENSFHEP00000020396	ATPase H+ transporting V1 subunit B2.	Uncharacterized protein.	0.997
ATP6V1B2	LOC105922498	ENSFHEP00000013957	ENSFHEP00000011820	ATPase H+ transporting V1 subunit B2.	ATPase, H+ transporting, lysosomal, V1 subunit B, member a.	0.948
ATP6V1B2	LOC105926136	ENSFHEP00000013957	ENSFHEP00000004972	ATPase H+ transporting V1 subunit B2.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.997
ATP6V1B2	LOC105936990	ENSFHEP00000013957	ENSFHEP00000034677	ATPase H+ transporting V1 subunit B2.	Consortin, connexin sorting protein b.	0.993
ATP6V1B2	LOC105939711	ENSFHEP00000013957	ENSFHEP00000004198	ATPase H+ transporting V1 subunit B2.	Lens intrinsic membrane protein 2.3.	0.993
ATP6V1B2	atp6v0b	ENSFHEP00000013957	ENSFHEP00000031653	ATPase H+ transporting V1 subunit B2.	V-type proton ATPase 21 kDa proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.	0.997
ATP6V1B2	atp6v0d1	ENSFHEP00000013957	ENSFHEP00000020409	ATPase H+ transporting V1 subunit B2.	ATPase H+ transporting V0 subunit d1.	0.997
ATP6V1B2	atp6v1e1	ENSFHEP00000013957	ENSFHEP00000001915	ATPase H+ transporting V1 subunit B2.	ATPase H+ transporting V1 subunit E1b.	0.999
ATP6V1B2	atp6v1f	ENSFHEP00000013957	ENSFHEP00000035128	ATPase H+ transporting V1 subunit B2.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.999
ATP6V1B2	atp6v1h	ENSFHEP00000013957	ENSFHEP00000014410	ATPase H+ transporting V1 subunit B2.	ATPase H+ transporting V1 subunit H.	0.999
ENSFHEP00000020396	ATP6V1B2	ENSFHEP00000020396	ENSFHEP00000013957	Uncharacterized protein.	ATPase H+ transporting V1 subunit B2.	0.997
ENSFHEP00000020396	LOC105922498	ENSFHEP00000020396	ENSFHEP00000011820	Uncharacterized protein.	ATPase, H+ transporting, lysosomal, V1 subunit B, member a.	0.997
ENSFHEP00000020396	LOC105926136	ENSFHEP00000020396	ENSFHEP00000004972	Uncharacterized protein.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.994
ENSFHEP00000020396	LOC105936990	ENSFHEP00000020396	ENSFHEP00000034677	Uncharacterized protein.	Consortin, connexin sorting protein b.	0.991
ENSFHEP00000020396	LOC105939711	ENSFHEP00000020396	ENSFHEP00000004198	Uncharacterized protein.	Lens intrinsic membrane protein 2.3.	0.991
ENSFHEP00000020396	atp6v0b	ENSFHEP00000020396	ENSFHEP00000031653	Uncharacterized protein.	V-type proton ATPase 21 kDa proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.	0.998
ENSFHEP00000020396	atp6v1e1	ENSFHEP00000020396	ENSFHEP00000001915	Uncharacterized protein.	ATPase H+ transporting V1 subunit E1b.	0.999
ENSFHEP00000020396	atp6v1f	ENSFHEP00000020396	ENSFHEP00000035128	Uncharacterized protein.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.999
ENSFHEP00000020396	atp6v1h	ENSFHEP00000020396	ENSFHEP00000014410	Uncharacterized protein.	ATPase H+ transporting V1 subunit H.	0.997
LOC105922498	ATP6V1B2	ENSFHEP00000011820	ENSFHEP00000013957	ATPase, H+ transporting, lysosomal, V1 subunit B, member a.	ATPase H+ transporting V1 subunit B2.	0.948