Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000000019G-patch domain-containing protein. (350 aa)    
Predicted Functional Partners:
ENSPREP00000002387
Uncharacterized protein.
      
 0.695
Clg11h6orf47
Uncharacterized protein.
      
 0.625
prkrip1
PRKR interacting protein 1.
   
  
 0.624
fam32a
Family with sequence similarity 32 member A.
      
 0.598
LOC103465806
Golgi transport 1Bb.
      
 0.594
GOLT1B
Golgi transport 1B.
      
 0.594
clg6hxorf56
Zgc:103697.
      
 0.579
sde2
Uncharacterized protein.
      
 0.578
fam50a
Family with sequence similarity 50 member A.
      
 0.575
apom
Uncharacterized protein.
      
 0.575
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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