LOC103462236 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103462236

ATP-binding cassette, sub-family G (WHITE), member 2c. (594 aa)

Predicted Functional Partners:

abcg5

0.830

LOC103476915

0.638

LOC103476920

0.638

cdca8

0.496

ENSPREP00000024662

0.475

ENSPREP00000024692

0.475

atp5f1c

0.475

abcc8

0.469

atp5f1b

0.467

LOC103474828

0.462

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000024662	LOC103462236	ENSPREP00000024662	ENSPREP00000000030	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.475
ENSPREP00000024692	LOC103462236	ENSPREP00000024692	ENSPREP00000000030	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.475
LOC103462236	ENSPREP00000024662	ENSPREP00000000030	ENSPREP00000024662	ATP-binding cassette, sub-family G (WHITE), member 2c.	Uncharacterized protein.	0.475
LOC103462236	ENSPREP00000024692	ENSPREP00000000030	ENSPREP00000024692	ATP-binding cassette, sub-family G (WHITE), member 2c.	Uncharacterized protein.	0.475
LOC103462236	LOC103474828	ENSPREP00000000030	ENSPREP00000010904	ATP-binding cassette, sub-family G (WHITE), member 2c.	Apolipoprotein A-Ib.	0.462
LOC103462236	LOC103476915	ENSPREP00000000030	ENSPREP00000029867	ATP-binding cassette, sub-family G (WHITE), member 2c.	Uncharacterized protein.	0.638
LOC103462236	LOC103476920	ENSPREP00000000030	ENSPREP00000030089	ATP-binding cassette, sub-family G (WHITE), member 2c.	Uncharacterized protein.	0.638
LOC103462236	abcc8	ENSPREP00000000030	ENSPREP00000030142	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family C (CFTR/MRP), member 8.	0.469
LOC103462236	abcg5	ENSPREP00000000030	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.830
LOC103462236	atp5f1b	ENSPREP00000000030	ENSPREP00000019616	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.467
LOC103462236	atp5f1c	ENSPREP00000000030	ENSPREP00000026718	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP synthase subunit gamma.	0.475
LOC103462236	cdca8	ENSPREP00000000030	ENSPREP00000013991	ATP-binding cassette, sub-family G (WHITE), member 2c.	Cell division cycle associated 8.	0.496
LOC103474828	LOC103462236	ENSPREP00000010904	ENSPREP00000000030	Apolipoprotein A-Ib.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.462
LOC103474828	abcg5	ENSPREP00000010904	ENSPREP00000005423	Apolipoprotein A-Ib.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.560
LOC103476915	LOC103462236	ENSPREP00000029867	ENSPREP00000000030	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.638
LOC103476915	abcg5	ENSPREP00000029867	ENSPREP00000005423	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.450
LOC103476920	LOC103462236	ENSPREP00000030089	ENSPREP00000000030	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.638
LOC103476920	abcg5	ENSPREP00000030089	ENSPREP00000005423	Uncharacterized protein.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.450
abcc8	LOC103462236	ENSPREP00000030142	ENSPREP00000000030	ATP-binding cassette, sub-family C (CFTR/MRP), member 8.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.469
abcg5	LOC103462236	ENSPREP00000005423	ENSPREP00000000030	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.830