Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000000054LAM_G_DOMAIN domain-containing protein. (229 aa)    
Predicted Functional Partners:
ENSPREP00000009074
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
LOC103473505
Fibrillar collagen NC1 domain-containing protein.
 
   
 0.700
ENSPREP00000003635
Collagen, type I, alpha 2.
 
 
 
  0.693
LOC103468138
Collagen, type I, alpha 1a.
 
   
  0.640
LOC103467632
Collagen, type II, alpha 1a.
 
 
 
  0.639
LOC103461870
Collagen, type V, alpha 2a.
 
   
  0.600
ENSPREP00000011135
Uncharacterized protein.
 
 
 
  0.590
LOC103472008
Uncharacterized protein.
 
      0.512
LOC103458744
Collagen, type X, alpha 1a.
 
   
  0.508
col10a1
Collagen, type X, alpha 1b.
 
   
  0.504
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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