STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000000054LAM_G_DOMAIN domain-containing protein. (229 aa)    
Predicted Functional Partners:
ENSPREP00000009074
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
ENSPREP00000003635
Collagen, type I, alpha 2.
 
 
 
  0.684
LOC103473505
Fibrillar collagen NC1 domain-containing protein.
 
   
 0.679
LOC103461870
Collagen, type V, alpha 2a.
 
 
 
  0.647
LOC103468138
Collagen, type I, alpha 1a.
 
 
 
  0.639
LOC103467632
Collagen, type II, alpha 1a.
 
 
 
  0.633
ENSPREP00000011135
Uncharacterized protein.
 
 
 
  0.584
LOC103472008
Uncharacterized protein.
 
 
 
  0.523
col10a1
Collagen, type X, alpha 1b.
 
   
  0.490
LOC103458744
Collagen, type X, alpha 1a.
 
      0.484
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.