STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462017Uncharacterized protein. (701 aa)    
Predicted Functional Partners:
efcab7
EF-hand calcium binding domain 7.
   
 0.873
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.790
EVC2
EvC ciliary complex subunit 2.
     
 0.709
ttc23
Tetratricopeptide repeat domain 23.
    
 
 0.646
ttc34
Tetratricopeptide repeat domain 34.
   
    0.588
LOC103461037
RAN binding protein 2.
   
 
  0.577
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 
 0.574
LOC103476825
Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family.
     
 0.531
kctd2
Potassium channel tetramerization domain containing 2.
    
 0.515
EVC
EvC ciliary complex subunit 1.
    
 0.487
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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