Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plrg1Pleiotropic regulator 1. (510 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA processing factor 19.
   
0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.999
ctnnbl1
Catenin, beta like 1.
   
 0.998
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.998
xab2
XPA binding protein 2.
   
 0.992
wbp11
WW domain binding protein 11.
    
 0.988
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.984
yju2
YJU2 splicing factor homolog.
    
 
 0.984
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.982
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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