STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim3PDZ and LIM domain 3a. (315 aa)    
Predicted Functional Partners:
ENSPREP00000029288
PDZ and LIM domain 5a.
 
 
 
 0.703
ENSPREP00000012567
Ciliary neurotrophic factor.
      
 0.670
strbp
Spermatid perinuclear RNA binding protein.
      
 0.670
ENSPREP00000018298
Uncharacterized protein.
 
 
0.629
sh3rf3
SH3 domain containing ring finger 3.
    
 0.592
atox1
Antioxidant 1 copper chaperone.
      
 0.589
pdlim7
PDZ and LIM domain 7.
   
 
0.571
ENSPREP00000029216
PDZ and LIM domain 5a.
   
 
0.551
LOC103473769
PDZ and LIM domain 5b.
   
 
0.550
vcl
Vinculin b.
   
 0.548
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.