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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim3PDZ and LIM domain 3a. (315 aa)    
Predicted Functional Partners:
ing2
Inhibitor of growth protein.
   
  
 0.683
ENSPREP00000012567
Ciliary neurotrophic factor.
      
 0.681
parva
Parvin, alpha a.
   
 0.566
parvg
Parvin, gamma.
   
 0.566
parvb
Parvin, beta.
   
 0.566
LOC103468098
ADP-ribosylation factor-like 8A; Belongs to the small GTPase superfamily. Arf family.
    
 0.539
ACSL1
Acyl-CoA synthetase long chain family member 1.
    
 
 0.537
vcl
Vinculin b.
   
 0.520
LOC103476978
Vinculin a.
   
 0.520
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 0.510
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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