STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fat1FAT atypical cadherin 1a. (4541 aa)    
Predicted Functional Partners:
LOC103471674
Solute carrier family 36 member 1.
      
 0.681
drd2
Dopamine receptor D2a; Belongs to the G-protein coupled receptor 1 family.
      
 0.609
fjx1
Four-jointed box kinase 1.
   
 
 0.586
LOC103470384
Limb and CNS expressed 1.
   
 0.556
lix1l
Limb and CNS expressed 1 like.
   
 0.556
LOC103464624
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.472
LOC103477989
Atrophin 1.
    
 0.472
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.472
nphs2
NPHS2 stomatin family member, podocin.
    
 
 0.463
fat4
FAT atypical cadherin 4.
  
0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.