STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frg1FSHD region gene 1. (267 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.973
prpf8
Pre-mRNA processing factor 8.
    
 
 0.856
prpf19
Pre-mRNA processing factor 19.
    
   0.807
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
   0.780
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 
 0.712
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 
 0.705
bcas2
BCAS2 pre-mRNA processing factor.
   
 
 0.632
cir1
Corepressor interacting with RBPJ, 1.
   
 
 0.630
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 
 0.629
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
    
 
 0.629
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.