Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clrn2Clarin 2. (231 aa)    
Predicted Functional Partners:
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
      
 0.793
emb
Embigin.
      
 0.618
LOC103466819
Engulfment and cell motility 3.
    
 0.614
LOC103472297
Engulfment and cell motility 1.
    
 0.614
elmo2
Engulfment and cell motility 2.
    
 0.614
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.611
crk
CRK proto-oncogene, adaptor protein.
    
 0.611
ENSPREP00000023825
SH2 domain-containing protein.
    
 0.611
fam136a
Family with sequence similarity 136 member A.
      
 0.603
lrrc31
Leucine rich repeat containing 31.
      
 0.597
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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