Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LrbaWD_REPEATS_REGION domain-containing protein. (288 aa)    
Predicted Functional Partners:
lrba
LPS-responsive vesicle trafficking, beach and anchor containing.
 
      0.895
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
 
    
0.579
LOC103473440
Notch receptor 1a.
    
  0.538
notch1
Notch receptor 1b.
    
  0.538
tbc1d31
TBC1 domain family, member 31.
      
 0.408
ctps1
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
      
 0.407
urb1
URB1 ribosome biogenesis homolog.
      
 0.403
ENSPREP00000000280
General transcription factor IIIAa.
     
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.