Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BFARBifunctional apoptosis regulator. (457 aa)    
Predicted Functional Partners:
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.758
CAAP1
Caspase activity and apoptosis inhibitor 1.
      
 0.595
nudcd1
NudC domain containing 1.
    
 
 0.563
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.552
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.544
rps27a
Ribosomal protein S27a.
   
  0.543
lig3
DNA ligase.
      
 0.513
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.504
reep3
Receptor expression-enhancing protein.
      
 0.503
nbn
Nibrin.
    
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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