STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469417ATP-binding cassette, sub-family A (ABC1), member 1A. (2269 aa)    
Predicted Functional Partners:
RAC1
Rac family small GTPase 1.
    
 0.909
LOC103481975
Uncharacterized protein.
    
 0.909
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.817
LOC103477850
Uncharacterized protein.
    
 0.690
LOC103477849
Uncharacterized protein.
    
 0.690
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
  
 0.587
LOC103474828
Apolipoprotein A-Ib.
    
 0.535
CDC42
Cell division cycle 42.
    
 0.511
LOC103465423
Cell division cycle 42.
    
 0.511
LOC103467002
Nuclear receptor subfamily 1, group H, member 5.
    
 0.504
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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