Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmc8Transmembrane channel-like protein. (701 aa)    
Predicted Functional Partners:
Tmc3
Si:dkey-15b23.3.
      
 0.602
scn3b
Sodium channel, voltage-gated, type III, beta.
      
 0.513
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
    
 0.431
LOC103479739
Uncharacterized protein.
    
 0.421
LOC103478458
Protein tyrosine phosphatase receptor type Ub.
    
 0.417
LOC103471974
Protein tyrosine phosphatase receptor type Ua.
    
 0.417
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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