Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMERB1BMERB domain containing 1. (197 aa)    
Predicted Functional Partners:
dctn4
Dynactin 4.
    
   0.907
dctn1
Dynactin 1b.
    
   0.791
LOC103480555
Dynactin 1a.
    
   0.791
LOC103473156
Actin related protein 1, centractin.
    
   0.790
actr10
Actin related protein 10; Belongs to the actin family.
    
   0.787
fopnl
Fgfr1op N-terminal like.
      
 0.758
MARF1
Meiosis regulator and mRNA stability factor 1.
      
 0.758
DCTN6
Dynactin subunit 6.
    
   0.752
DCTN6-2
Dynactin subunit 6.
    
   0.752
LOC103458407
Rap guanine nucleotide exchange factor (GEF) 4.
    
   0.644
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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