Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc151Uncharacterized protein. (400 aa)    
Predicted Functional Partners:
armc4
Armadillo repeat containing 4.
    
 
 0.981
LOC103464463
Coiled-coil domain containing 114.
  
 0.948
ift46
Uncharacterized protein.
    
 
 0.941
ttc25
Tetratricopeptide repeat domain 25.
   
 0.932
commd8
COMM domain containing 8.
    
  0.924
ift74
Intraflagellar transport 74.
    
  0.923
commd2
COMM domain containing 2.
    
  0.920
ift81
Intraflagellar transport 81 homolog.
    
   0.917
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
    
 
 0.916
ENSPREP00000009737
Uncharacterized protein.
    
 0.912
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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