Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rxylt1Ribitol xylosyltransferase 1. (451 aa)    
Predicted Functional Partners:
fktn
Fukutin.
   
 0.999
fkrp
Fukutin related protein.
    
 0.995
b4gat1
Beta-1,4-glucuronyltransferase 1.
   
 
 0.990
Pomgnt1
Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).
    
 0.985
Pomgnt2
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-).
      
 0.917
pomk
Protein O-mannose kinase.
      
 0.917
b3galnt2
Hexosyltransferase.
   
  
 0.906
pomt1
Protein-O-mannosyltransferase 1.
   
  
 0.895
pomt2
Protein-O-mannosyltransferase 2.
   
  
 0.828
fam3c
Family with sequence similarity 3 member C.
    
 0.795
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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