Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxa3Homeobox A4a. (427 aa)    
Predicted Functional Partners:
ENSPREP00000032134
Forkhead box N1.
    
 0.711
arpc3
Actin related protein 2/3 complex, subunit 3.
    
   0.652
pax9
Paired box 9.
    
 
 0.648
hoxa5
Homeobox A5a.
   
  
 0.596
LOC103468209
Homeobox B4a.
   
  
 0.572
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 0.550
LOC103477587
Pre-B-cell leukemia homeobox 2.
    
 0.546
hoxd4
Homeobox D4a.
   
  
 0.533
dhx36
DEAH (Asp-Glu-Ala-His) box polypeptide 36.
      
 0.526
pax1
Paired box 1a.
    
 
 0.523
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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