Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000000810Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
TUT7
Terminal uridylyl transferase 7.
 
    
0.902
ENSPREP00000000840
Uncharacterized protein.
 
      0.899
Lin28a
CCHC-type domain-containing protein.
    
 0.690
papolg
Poly(A) polymerase gamma.
   
 
 0.635
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
   
 
 0.618
sympk
Symplekin.
   
 0.546
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.537
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.478
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.474
tent4b
Terminal nucleotidyltransferase 4B.
   
  
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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