Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
clg4h19orf25Si:ch73-238c9.1. (107 aa)    
Predicted Functional Partners:
rint1
RAD50 interactor 1.
    
 
 0.973
LOC103464057
Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.927
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
   0.907
zw10
Zw10 kinetochore protein.
    
 
 0.863
LOC103468820
BAI1-associated protein 2a.
    
   0.774
BAIAP2
BAI1 associated protein 2.
    
   0.774
stx18
Syntaxin 18.
    
 
 0.740
nbas
Neuroblastoma amplified sequence.
    
 
 0.735
LOC103479084
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
    
 
 0.733
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 
 0.733
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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