ENSPREP00000000945 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000000945

Uncharacterized protein. (163 aa)

Predicted Functional Partners:

snupn

0.966

snrpa1

0.921

gemin8

0.891

prcc

0.877

lsm4

0.792

sf3b3

0.792

aggf1

0.782

rbm8a

0.779

gemin4

0.765

gemin2

0.758

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000000945	aggf1	ENSPREP00000000945	ENSPREP00000001293	Uncharacterized protein.	Angiogenic factor with G patch and FHA domains 1.	0.782
ENSPREP00000000945	gemin2	ENSPREP00000000945	ENSPREP00000011293	Uncharacterized protein.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.758
ENSPREP00000000945	gemin4	ENSPREP00000000945	ENSPREP00000013465	Uncharacterized protein.	Gem (nuclear organelle) associated protein 4.	0.765
ENSPREP00000000945	gemin8	ENSPREP00000000945	ENSPREP00000018410	Uncharacterized protein.	Gem (nuclear organelle) associated protein 8.	0.891
ENSPREP00000000945	lsm4	ENSPREP00000000945	ENSPREP00000016701	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.792
ENSPREP00000000945	prcc	ENSPREP00000000945	ENSPREP00000018574	Uncharacterized protein.	Proline rich mitotic checkpoint control factor.	0.877
ENSPREP00000000945	rbm8a	ENSPREP00000000945	ENSPREP00000026004	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.779
ENSPREP00000000945	sf3b3	ENSPREP00000000945	ENSPREP00000029104	Uncharacterized protein.	Splicing factor 3b, subunit 3.	0.792
ENSPREP00000000945	snrpa1	ENSPREP00000000945	ENSPREP00000003187	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide A.	0.921
ENSPREP00000000945	snupn	ENSPREP00000000945	ENSPREP00000018742	Uncharacterized protein.	Snurportin 1.	0.966
aggf1	ENSPREP00000000945	ENSPREP00000001293	ENSPREP00000000945	Angiogenic factor with G patch and FHA domains 1.	Uncharacterized protein.	0.782
gemin2	ENSPREP00000000945	ENSPREP00000011293	ENSPREP00000000945	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.758
gemin2	gemin4	ENSPREP00000011293	ENSPREP00000013465	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem (nuclear organelle) associated protein 4.	0.986
gemin2	gemin8	ENSPREP00000011293	ENSPREP00000018410	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem (nuclear organelle) associated protein 8.	0.983
gemin2	snrpa1	ENSPREP00000011293	ENSPREP00000003187	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein polypeptide A.	0.922
gemin2	snupn	ENSPREP00000011293	ENSPREP00000018742	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Snurportin 1.	0.739
gemin4	ENSPREP00000000945	ENSPREP00000013465	ENSPREP00000000945	Gem (nuclear organelle) associated protein 4.	Uncharacterized protein.	0.765
gemin4	gemin2	ENSPREP00000013465	ENSPREP00000011293	Gem (nuclear organelle) associated protein 4.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.986
gemin4	gemin8	ENSPREP00000013465	ENSPREP00000018410	Gem (nuclear organelle) associated protein 4.	Gem (nuclear organelle) associated protein 8.	0.998
gemin4	snupn	ENSPREP00000013465	ENSPREP00000018742	Gem (nuclear organelle) associated protein 4.	Snurportin 1.	0.713