STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prox1Prospero homeobox 1a. (818 aa)    
Predicted Functional Partners:
LOC103465669
Link domain-containing protein.
      
 0.597
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
      
 0.590
vegfc
Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.
      
 0.541
ENSPREP00000004470
Uncharacterized protein.
    
   0.539
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
      
 0.533
LOC103467917
Uncharacterized protein.
   
 
 0.527
hhex
Homeobox domain-containing protein.
      
 0.503
xpo7
Exportin 7.
      
 0.503
ENSPREP00000000183
Uncharacterized protein.
      
 0.499
nr2f2
Nuclear receptor subfamily 2, group F, member 2.
   
 
 0.499
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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