Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr92WD repeat domain 92. (358 aa)    
Predicted Functional Partners:
rpap3
RNA polymerase II associated protein 3.
   
 0.991
uxt
Ubiquitously-expressed, prefoldin-like chaperone.
    
 
 0.984
pih1d1
PIH1 domain containing 1.
    
 
 0.983
Pfdn2
Prefoldin subunit 2.
    
 
 0.974
uri1
URI1 prefoldin like chaperone.
    
 
 0.971
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 
 0.967
ppp3r1
Uncharacterized protein.
 
 
 
 0.965
LOC103472014
Uncharacterized protein.
 
 
 
 0.962
POLR2E
RNA polymerase II subunit E.
   
 
 0.954
polr3e
Polymerase (RNA) III (DNA directed) polypeptide E.
    
   0.926
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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