STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcc5ATP-binding cassette, sub-family C (CFTR/MRP), member 5. (1214 aa)    
Predicted Functional Partners:
LOC103480848
ATP-binding cassette, sub-family G (WHITE), member 2a.
   
 0.608
Katnal2
Katanin p60 subunit A-like 2.
  
 0.568
abca12
ATP-binding cassette, sub-family A (ABC1), member 12.
   
 0.566
ENSPREP00000003924
ATP-binding cassette, sub-family E (OABP), member 1.
      
 0.561
abcf1
ATP-binding cassette, sub-family F (GCN20), member 1.
  
 
 0.554
abcb6
ATP-binding cassette, sub-family B (MDR/TAP), member 6a.
    
0.522
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 0.490
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.490
ABCB1
ATP binding cassette subfamily B member 1.
   
0.485
ENSPREP00000002302
ATP-binding cassette, sub-family G (WHITE), member 2d.
   
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.