STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeyYbeY metalloendoribonuclease. (168 aa)    
Predicted Functional Partners:
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.950
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.920
eral1
Era-like 12S mitochondrial rRNA chaperone 1.
  
  
 0.919
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.912
Mrpl21
Mitochondrial ribosomal protein L21.
  
 
 0.906
dap3
Death associated protein 3.
    
   0.891
mrpl46
Mitochondrial ribosomal protein L46.
    
   0.873
mrpl43
Mitochondrial ribosomal protein L43.
    
   0.873
mrpl47
Mitochondrial ribosomal protein L47.
    
   0.873
ascc1
Activating signal cointegrator 1 complex subunit 1.
    
   0.872
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.