ybey protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ybey

YbeY metalloendoribonuclease. (168 aa)

Predicted Functional Partners:

LACTB2

0.900

eral1

0.814

mrpl17

0.774

rps11

0.772

Mrpl21

0.754

pnpo

0.746

mtif2

0.712

sod2

0.695

dap3

0.665

trit1

0.645

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LACTB2	ybey	ENSPREP00000027997	ENSPREP00000001038	Lactamase beta 2.	YbeY metalloendoribonuclease.	0.900
Mrpl21	dap3	ENSPREP00000032189	ENSPREP00000026175	Mitochondrial ribosomal protein L21.	Death associated protein 3.	0.922
Mrpl21	mrpl17	ENSPREP00000032189	ENSPREP00000021683	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.995
Mrpl21	mtif2	ENSPREP00000032189	ENSPREP00000008224	Mitochondrial ribosomal protein L21.	Mitochondrial translational initiation factor 2.	0.857
Mrpl21	rps11	ENSPREP00000032189	ENSPREP00000021648	Mitochondrial ribosomal protein L21.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.972
Mrpl21	sod2	ENSPREP00000032189	ENSPREP00000008085	Mitochondrial ribosomal protein L21.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.780
Mrpl21	ybey	ENSPREP00000032189	ENSPREP00000001038	Mitochondrial ribosomal protein L21.	YbeY metalloendoribonuclease.	0.754
dap3	Mrpl21	ENSPREP00000026175	ENSPREP00000032189	Death associated protein 3.	Mitochondrial ribosomal protein L21.	0.922
dap3	eral1	ENSPREP00000026175	ENSPREP00000010172	Death associated protein 3.	Era-like 12S mitochondrial rRNA chaperone 1.	0.996
dap3	mrpl17	ENSPREP00000026175	ENSPREP00000021683	Death associated protein 3.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.923
dap3	mtif2	ENSPREP00000026175	ENSPREP00000008224	Death associated protein 3.	Mitochondrial translational initiation factor 2.	0.859
dap3	rps11	ENSPREP00000026175	ENSPREP00000021648	Death associated protein 3.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.782
dap3	sod2	ENSPREP00000026175	ENSPREP00000008085	Death associated protein 3.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.903
dap3	ybey	ENSPREP00000026175	ENSPREP00000001038	Death associated protein 3.	YbeY metalloendoribonuclease.	0.665
eral1	dap3	ENSPREP00000010172	ENSPREP00000026175	Era-like 12S mitochondrial rRNA chaperone 1.	Death associated protein 3.	0.996
eral1	mtif2	ENSPREP00000010172	ENSPREP00000008224	Era-like 12S mitochondrial rRNA chaperone 1.	Mitochondrial translational initiation factor 2.	0.556
eral1	rps11	ENSPREP00000010172	ENSPREP00000021648	Era-like 12S mitochondrial rRNA chaperone 1.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.408
eral1	ybey	ENSPREP00000010172	ENSPREP00000001038	Era-like 12S mitochondrial rRNA chaperone 1.	YbeY metalloendoribonuclease.	0.814
mrpl17	Mrpl21	ENSPREP00000021683	ENSPREP00000032189	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Mitochondrial ribosomal protein L21.	0.995
mrpl17	dap3	ENSPREP00000021683	ENSPREP00000026175	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Death associated protein 3.	0.923