STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sclt1Sodium channel and clathrin linker 1. (680 aa)    
Predicted Functional Partners:
kiz
Kizuna centrosomal protein.
    
  0.962
cep83
Centrosomal protein 83.
   
 0.940
fbf1
Uncharacterized protein.
    
 0.823
cep89
Centrosomal protein 89.
     
 0.818
cep19
Centrosomal protein 19.
      
 0.810
CEP128
Centrosomal protein 128.
    
 0.764
c2cd3
C2 domain containing 3 centriole elongation regulator.
    
 0.753
CEP164
Centrosomal protein 164.
   
 0.752
lrrc45
Leucine rich repeat containing 45.
    
 0.737
ofd1
OFD1 centriole and centriolar satellite protein.
      
 0.672
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.