STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464964Transforming, acidic coiled-coil containing protein 1. (927 aa)    
Predicted Functional Partners:
LOC103477205
TACC_C domain-containing protein.
    
 
 0.907
ckap5
Cytoskeleton associated protein 5.
    
 0.865
fbxw11
F-box and WD repeat domain containing 11a.
    
   0.728
nif3l1
NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).
    
   0.728
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.662
ENSPREP00000022311
Transforming, acidic coiled-coil containing protein 3.
    
 
 0.617
memo1
Mediator of cell motility 1.
   
  0.580
snrpg
Small nuclear ribonucleoprotein G.
    
   0.562
aurka
Aurora kinase A; Belongs to the protein kinase superfamily.
   
 0.553
LOC103471497
Aurora kinase B; Belongs to the protein kinase superfamily.
   
 0.553
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.