STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
letmd1LETM1 domain containing 1. (332 aa)    
Predicted Functional Partners:
TMEM43
Uncharacterized protein.
    
   0.653
DLK1
Delta like non-canonical Notch ligand 1.
    
   0.562
cip2a
Cell proliferation regulating inhibitor of protein phosphatase 2A.
      
 0.547
LOC103476188
Neuro-oncological ventral antigen 1.
      
 0.521
LOC103475148
Uncharacterized protein.
      
 0.521
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
      
 0.516
LOC103476575
Pyridoxal (pyridoxine, vitamin B6) kinase b.
      
 0.503
LOC103460921
Pyridoxal (pyridoxine, vitamin B6) kinase a.
      
 0.503
RNF5
Ring finger protein 5.
    
   0.501
rnf185
Ring finger protein 185.
    
   0.501
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.