STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd1Ankyrin repeat domain 1a (cardiac muscle). (302 aa)    
Predicted Functional Partners:
LOC103462157
Lysyl oxidase-like 1.
   
 0.598
ENSPREP00000031844
ANK_REP_REGION domain-containing protein.
  
 
 0.575
asb12
Ankyrin repeat and SOCS box-containing 12b.
  
 
  0.546
LOC103481867
Ankyrin repeat and SOCS box containing 3.
  
     0.508
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.496
ift81
Intraflagellar transport 81 homolog.
    
 0.493
ANKRD34A
Ankyrin repeat domain 34A.
  
     0.481
tcap
Titin-cap (telethonin).
   
 
 0.476
emc10
ER membrane protein complex subunit 10.
      
 0.469
ift88
Intraflagellar transport 88 homolog.
   
 0.466
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.