STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata20Spermatogenesis associated 20. (823 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
    
  0.864
hmbs
Hydroxymethylbilane synthase a.
    
  0.847
coasy
CoA synthase.
      
 0.549
spata17
Spermatogenesis associated 17.
      
 0.549
LOC103475794
Spermidine/spermine N1-acetyltransferase family member 2b.
     
 0.548
pusl1
tRNA pseudouridine synthase.
      
 0.545
spata22
Spermatogenesis associated 22.
      
 0.528
spata4
Spermatogenesis associated 4.
      
 0.523
ENSPREP00000014094
NDK domain-containing protein.
   
 0.490
spata7
Uncharacterized protein.
      
 0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.