STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alkbh7AlkB homolog 7. (158 aa)    
Predicted Functional Partners:
Alkbh6
AlkB homolog 6.
   
  
 0.667
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.662
alkbh4
AlkB homolog 4, lysine demthylase.
   
  
 0.633
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.586
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.563
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
  
 0.562
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.550
nckipsd
NCK interacting protein with SH3 domain.
      
 0.544
jmjd4
Jumonji domain containing 4.
   
  
 0.540
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.535
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.