STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Alkbh7AlkB homolog 7. (158 aa)    
Predicted Functional Partners:
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.871
Alkbh6
AlkB homolog 6.
   
  
 0.796
alkbh4
AlkB homolog 4, lysine demthylase.
   
  
 0.742
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.722
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.667
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.661
pms1
PMS1 homolog 1, mismatch repair system component.
      
 0.661
nckipsd
NCK interacting protein with SH3 domain.
      
 0.656
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.636
pigp
Phosphatidylinositol glycan anchor biosynthesis, class P.
   
  
 0.621
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.