STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478589Sphingomyelin phosphodiesterase 5. (573 aa)    
Predicted Functional Partners:
smpd4
Sphingomyelin phosphodiesterase 4.
     
 0.962
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.943
smpd1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
     
 0.935
ENPP7
Ectonucleotide pyrophosphatase/phosphodiesterase 7.
     
 0.926
LOC103477493
Zgc:153896.
     
 0.926
sgms2
Sphingomyelin synthase 2a.
     
 0.904
smpd3
Sphingomyelin phosphodiesterase 3, neutral.
  
  
 
0.904
sgms1
Zgc:91976.
     
 0.904
LOC103480961
Sphingomyelin synthase 2b.
     
 0.904
ugcg
UDP-glucose ceramide glucosyltransferase.
     
 0.904
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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