STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463144Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
LOC103458407
Rap guanine nucleotide exchange factor (GEF) 4.
   
 0.815
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 0.720
LOC103459439
Leucine rich repeat containing 17.
    
 0.696
nkx1-1
NK1 transcription factor related 2-like,b.
     
 0.653
lcat
Lecithin-cholesterol acyltransferase.
      
 0.636
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
    
 0.630
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.630
LOC103469576
A-Raf proto-oncogene, serine/threonine kinase.
    
 0.630
creb3l1
cAMP responsive element binding protein 3-like 1.
      
 0.603
LOC103473427
Rap guanine nucleotide exchange factor (GEF) 1b.
    
 0.572
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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