STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000001092Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
Vwde
Uncharacterized protein.
 
     0.936
Ttc9c
Tetratricopeptide repeat domain 9C.
    
 0.439
cdc27
Cell division cycle 27.
    
 0.425
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.423
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.423
LOC103469257
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.409
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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