STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp7Charged multivesicular body protein 7. (492 aa)    
Predicted Functional Partners:
LOC103468028
Charged multivesicular body protein 4Bb.
    
 0.982
chmp4c
Charged multivesicular body protein 4C.
    
0.982
LOC103464227
Uncharacterized protein.
    
 0.982
chmp3
Charged multivesicular body protein 3.
   
 0.974
chmp2a
Charged multivesicular body protein 2A.
    
 0.908
ist1
IST1 factor associated with ESCRT-III.
    
 0.889
vps25
Vacuolar protein sorting 25 homolog.
    
 0.878
vta1
Vesicle (multivesicular body) trafficking 1.
    
 0.852
LOC103468818
Charged multivesicular body protein 6a.
    
0.835
chmp6
Charged multivesicular body protein 6.
    
0.835
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.