STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nufip2Nuclear FMR1 interacting protein 2. (640 aa)    
Predicted Functional Partners:
LOC103481378
LsmAD domain-containing protein.
   
 
 0.982
atxn2
Ataxin 2.
   
 
 0.962
fam98a
Family with sequence similarity 98 member A.
    
 
 0.956
lsm12
LSM12 homolog b.
   
 
 0.951
ENSPREP00000013186
Uncharacterized protein.
   
 
 0.928
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.928
fmr1
Fragile X mental retardation 1.
   
 
 0.918
LOC103461055
Fragile X mental retardation 1.
   
 
 0.918
rc3h1
Ring finger and CCCH-type domains 1b.
   
 
 0.916
g3bp2
Zgc:56304.
   
 
 0.846
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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