LOC103467956 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103467956

Nuclear envelope integral membrane protein 1. (429 aa)

Predicted Functional Partners:

ranbp1

0.922

LOC103461037

0.914

rangap1

0.812

LOC103481999

0.812

ube2i

0.792

LOC103468487

0.792

dlgap5

0.785

adgrd1

0.771

ran

0.771

ccdc77

0.762

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103461037	LOC103467956	ENSPREP00000019992	ENSPREP00000001114	RAN binding protein 2.	Nuclear envelope integral membrane protein 1.	0.914
LOC103461037	LOC103468487	ENSPREP00000019992	ENSPREP00000027513	RAN binding protein 2.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.987
LOC103461037	LOC103481999	ENSPREP00000019992	ENSPREP00000030639	RAN binding protein 2.	Ran GTPase activating protein 1b.	0.985
LOC103461037	adgrd1	ENSPREP00000019992	ENSPREP00000002470	RAN binding protein 2.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.931
LOC103461037	ran	ENSPREP00000019992	ENSPREP00000025717	RAN binding protein 2.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.931
LOC103461037	ranbp1	ENSPREP00000019992	ENSPREP00000028001	RAN binding protein 2.	RAN binding protein 1.	0.876
LOC103461037	rangap1	ENSPREP00000019992	ENSPREP00000026307	RAN binding protein 2.	RAN GTPase activating protein 1a.	0.985
LOC103461037	ube2i	ENSPREP00000019992	ENSPREP00000026310	RAN binding protein 2.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.987
LOC103467956	LOC103461037	ENSPREP00000001114	ENSPREP00000019992	Nuclear envelope integral membrane protein 1.	RAN binding protein 2.	0.914
LOC103467956	LOC103468487	ENSPREP00000001114	ENSPREP00000027513	Nuclear envelope integral membrane protein 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.792
LOC103467956	LOC103481999	ENSPREP00000001114	ENSPREP00000030639	Nuclear envelope integral membrane protein 1.	Ran GTPase activating protein 1b.	0.812
LOC103467956	adgrd1	ENSPREP00000001114	ENSPREP00000002470	Nuclear envelope integral membrane protein 1.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.771
LOC103467956	ccdc77	ENSPREP00000001114	ENSPREP00000030381	Nuclear envelope integral membrane protein 1.	Coiled-coil domain containing 77.	0.762
LOC103467956	dlgap5	ENSPREP00000001114	ENSPREP00000006448	Nuclear envelope integral membrane protein 1.	Discs, large (Drosophila) homolog-associated protein 5.	0.785
LOC103467956	ran	ENSPREP00000001114	ENSPREP00000025717	Nuclear envelope integral membrane protein 1.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.771
LOC103467956	ranbp1	ENSPREP00000001114	ENSPREP00000028001	Nuclear envelope integral membrane protein 1.	RAN binding protein 1.	0.922
LOC103467956	rangap1	ENSPREP00000001114	ENSPREP00000026307	Nuclear envelope integral membrane protein 1.	RAN GTPase activating protein 1a.	0.812
LOC103467956	ube2i	ENSPREP00000001114	ENSPREP00000026310	Nuclear envelope integral membrane protein 1.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.792
LOC103468487	LOC103461037	ENSPREP00000027513	ENSPREP00000019992	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RAN binding protein 2.	0.987
LOC103468487	LOC103467956	ENSPREP00000027513	ENSPREP00000001114	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Nuclear envelope integral membrane protein 1.	0.792