STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dennd6aDENN/MADD domain containing 6Aa. (610 aa)    
Predicted Functional Partners:
dennd10
DENN domain containing 10.
      
 0.758
avl9
AVL9 homolog (S. cerevisiase).
      
 0.758
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
   0.654
LOC103459588
UDENN domain-containing protein.
      
 0.599
dennd11
DENN domain containing 11.
      
 0.599
dennd1a
DENN/MADD domain containing 1A.
      
 0.575
LOC103459897
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
     
  0.532
LOC103473793
RAB14, member RAS oncogene family.
     
 0.519
LOC103470772
Uncharacterized protein.
     
 0.519
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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