LOC103464170 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103464170

Zgc:77739. (226 aa)

Predicted Functional Partners:

taf11

0.627

Mrps18c

0.601

LOC103476294

0.575

srrm1

0.546

Slc31a2

0.502

zdhhc3

0.501

LOC103472657

0.501

zfyve19

0.483

synrg

0.461

btaf1

0.404

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103464170	LOC103472657	ENSPREP00000001135	ENSPREP00000026629	Zgc:77739.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.501
LOC103464170	LOC103476294	ENSPREP00000001135	ENSPREP00000021467	Zgc:77739.	Myelin protein zero-like 1 like.	0.575
LOC103464170	Mrps18c	ENSPREP00000001135	ENSPREP00000018585	Zgc:77739.	Mitochondrial ribosomal protein S18C; Belongs to the bacterial ribosomal protein bS18 family.	0.601
LOC103464170	Slc31a2	ENSPREP00000001135	ENSPREP00000031365	Zgc:77739.	Solute carrier family 31 member 2.	0.502
LOC103464170	btaf1	ENSPREP00000001135	ENSPREP00000004587	Zgc:77739.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.404
LOC103464170	srrm1	ENSPREP00000001135	ENSPREP00000003793	Zgc:77739.	Serine/arginine repetitive matrix 1.	0.546
LOC103464170	synrg	ENSPREP00000001135	ENSPREP00000013765	Zgc:77739.	Synergin, gamma.	0.461
LOC103464170	taf11	ENSPREP00000001135	ENSPREP00000007898	Zgc:77739.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.627
LOC103464170	zdhhc3	ENSPREP00000001135	ENSPREP00000016732	Zgc:77739.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.501
LOC103464170	zfyve19	ENSPREP00000001135	ENSPREP00000032032	Zgc:77739.	Zinc finger, FYVE domain containing 19.	0.483
LOC103472657	LOC103464170	ENSPREP00000026629	ENSPREP00000001135	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Zgc:77739.	0.501
LOC103472657	LOC103476294	ENSPREP00000026629	ENSPREP00000021467	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Myelin protein zero-like 1 like.	0.459
LOC103472657	Mrps18c	ENSPREP00000026629	ENSPREP00000018585	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Mitochondrial ribosomal protein S18C; Belongs to the bacterial ribosomal protein bS18 family.	0.598
LOC103472657	srrm1	ENSPREP00000026629	ENSPREP00000003793	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Serine/arginine repetitive matrix 1.	0.510
LOC103472657	zfyve19	ENSPREP00000026629	ENSPREP00000032032	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Zinc finger, FYVE domain containing 19.	0.488
LOC103476294	LOC103464170	ENSPREP00000021467	ENSPREP00000001135	Myelin protein zero-like 1 like.	Zgc:77739.	0.575
LOC103476294	LOC103472657	ENSPREP00000021467	ENSPREP00000026629	Myelin protein zero-like 1 like.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.459
LOC103476294	Mrps18c	ENSPREP00000021467	ENSPREP00000018585	Myelin protein zero-like 1 like.	Mitochondrial ribosomal protein S18C; Belongs to the bacterial ribosomal protein bS18 family.	0.670
LOC103476294	srrm1	ENSPREP00000021467	ENSPREP00000003793	Myelin protein zero-like 1 like.	Serine/arginine repetitive matrix 1.	0.403
LOC103476294	zdhhc3	ENSPREP00000021467	ENSPREP00000016732	Myelin protein zero-like 1 like.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.459