STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467776ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 
 0.868
sptssa
Serine palmitoyltransferase, small subunit A.
    
 
 0.667
LOC103460525
Serine palmitoyltransferase, long chain base subunit 2a.
    
 
 0.547
LOC103460663
AMOP domain-containing protein.
    
 
 0.547
ism1
Isthmin 1.
    
 
 0.547
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 
 0.547
ism2
Isthmin 2b.
    
 
 0.547
LOC103457821
Serine palmitoyltransferase, long chain base subunit 2b.
    
 
 0.547
alas1
5-aminolevulinate synthase.
    
 
 0.423
ENSPREP00000022258
Glycine C-acetyltransferase.
    
 
 0.423
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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