STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469312LITAF domain-containing protein. (198 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 
 0.606
nedd4
E3 ubiquitin-protein ligase.
    
 
 0.587
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.587
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.510
fancm
Uncharacterized protein.
    
 0.510
LOC103470059
Fumarylacetoacetate hydrolase domain containing 2A.
      
 0.503
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.499
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
    
 0.497
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.490
LOC103470686
Interleukin-1.
      
 0.473
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.