STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Arhgap30Rho-GAP domain-containing protein. (63 aa)    
Predicted Functional Partners:
usf2
BHLH domain-containing protein.
   
 0.934
ENSPREP00000013476
Upstream transcription factor 2, c-fos interacting.
   
 0.934
sp1
Sp1 transcription factor.
    
 0.619
fosl1
FOS-like antigen 1a.
    
 
 0.578
ENSPREP00000030210
Si:dkey-23i12.7.
    
 
 0.578
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.555
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.526
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 
 0.521
GTF3C1
General transcription factor IIIC subunit 1.
    
   0.500
LOC103466877
Mitogen-activated protein kinase.
    
 0.476
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.