STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479515Testis associated actin remodelling kinase 2. (618 aa)    
Predicted Functional Partners:
parva
Parvin, alpha a.
     
 0.572
parvb
Parvin, beta.
     
 0.572
traf7
TNF receptor-associated factor 7.
   
 0.513
gak
Cyclin G associated kinase.
    
 0.495
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.490
LOC103473378
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.479
LOC103480122
Pellino E3 ubiquitin protein ligase family member 3.
    
 0.414
LOC103459010
Pellino E3 ubiquitin protein ligase family member 2.
    
 0.414
LOC103457902
Uncharacterized protein.
    
 0.414
LOC103469849
Pellino E3 ubiquitin protein ligase 1.
    
 0.414
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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