STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRTGProtogenin. (1138 aa)    
Predicted Functional Partners:
LOC103467432
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.581
capsl
Calcyphosine-like b.
    
 
 0.537
ENSPREP00000024586
Angiomotin.
     
 0.530
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.494
ENSPREP00000007409
NGF domain-containing protein; Belongs to the NGF-beta family.
    
 
 0.463
Nkx1-2
NK1 transcription factor related 2-like,a.
      
 0.461
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
    
 0.433
LOC103473933
EGF-like domain-containing protein.
    
 0.427
IKZF5
IKAROS family zinc finger 5.
     
 0.416
LOC103476747
IKAROS family zinc finger 5.
     
 0.416
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.