STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475888Musashi RNA-binding protein 2a. (407 aa)    
Predicted Functional Partners:
zc3h14
Zinc finger CCCH-type containing 14.
    
 
 0.795
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
  
 
 0.746
LOC103469051
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
  
 
 0.543
ENSPREP00000001423
Serine and arginine rich splicing factor 6a.
  
 0.532
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 
 0.512
tra2b
Transformer 2 beta homolog.
  
 
 0.488
TNPO2
Transportin 2.
   
 
 0.484
TNPO2-2
Transportin 2.
   
 
 0.484
srsf5
Serine and arginine rich splicing factor 5a.
  
 0.484
tnpo1
Transportin 1.
   
 
 0.484
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.