STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475888Musashi RNA-binding protein 2a. (407 aa)    
Predicted Functional Partners:
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 
 0.713
zc3h14
Zinc finger CCCH-type containing 14.
    
 
 0.709
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
  
 
 0.672
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 
 0.617
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.565
ENSPREP00000001423
Serine and arginine rich splicing factor 6a.
  
 0.552
LOC103469051
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
  
 
 0.550
tra2b
Transformer 2 beta homolog.
  
 
 0.518
srsf5
Serine and arginine rich splicing factor 5a.
  
 0.507
ranbp1
RAN binding protein 1.
   
  
 0.499
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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